User:Research Bot

This is an account operated by User:Daniel Mietchen for semi-automated or tool-assisted edits on research-related topics.

Bot flag

This user account is a bot with a bot flag. The bot is operated by Daniel Mietchen. Block this bot if it is malfunctioning. Check its work. Contact the operator about mistakes. See all Requests for Permissions related to this bot: 1 Task: 1: Make WIDAR edits License:

Frequently used tools

• QuickStatements (Q20084080)
  • e.g. on the basis of
    • Source Metadata
    • New Resolve Authors
    • SPARQL queries
    • PubMed API
    • Constraint violations
      • P356
      • P698
      • P932
• Descriptioner
  • Similar query
• Fatameh
  • PubMed
    • original call
    • harmonized call
  • PMC: harmonized
  • DOI: harmonized

Maintenance queries

• Papers with "zika" in the title but no P921 tag for Q202864 (including known exceptions)
  • variant optimized for use with QuickStatements
    • similar for disease eradication
  • same for "incidental finding"
    • for Edits on that basis, use S887 Q69652283 (note the space has actually to be a tab, but MediaWiki does not display that properly), i.e. based on heuristic (P887) with value inferred from title (Q69652283)
    • e.g. sed 's/$/\tP921\tQ1492760\tS887\tQ69652283/' sandbox1.txt > sandbox2.txt
  • "data sharing"
    • TABernacle
  • "phase 1"/ "phase i" trial
    • regex for spelling variants
  • search for "goat cheese" on Wikipedia
    • variant for people whose English Wikipedia article contains the term "Spanish flu"
  • Papers with "steppe" in the title
  • publications with "tuberculosis" and/ or "Mycobacterium tuberculosis" in the title
    • variant
    • adapted for "divergent evolution"
    • variant for data access
  • papers about amyotrophic lateral sclerosis and subtypes
• Papers about taxa
• viral transmission ontology skeleton
• TABernacle for items without P31 or P279 with "virus" in their title
• search for publication by author name year, e.g.
  • Wang 2018 dna aptamer
    • A variant that takes into account author (P50)
      • A further variant for titles containing elements of an author's name
  • dell 1972 a new genus and species of atelecyclid crab from new zealand
    • simpler version
  • see also Scientific papers about amino acid changes due to mutation
• search for author name string variants (using Wang Zhang as an example)
  • a similar query
• Papers with the same PMCID
  • similar for PubMed ID, with some simplifications
• instances of scientific articles without a description in English
• items with PubMed ID but no English labels or titles
• scientific journals without "main subject"
• scientific journals as "main subject"
  • example fix
    • removal of incorrect main subject
      • Query batch
    • addition of correct main subject
      • Query batch
  • Instructions for semi-automated fix
• Titles containing HTML escape sequences
  • would be great to have a tool to
    1. fix that
    2. ping database providers/ publishers about it
• Labels containing markup tags
• Title: "[Not Available]"
• topics used in P921 (main subject) statements on items about scientific papers, ordered by popularity
  • simplified version that is more robust
• Newspapers with an infobox in their enwiki page
• Most cited articles without P921
• papers without P921 (main subject) statement but with "virus" in the title
• PMC papers without topic but with ORCID author
• Scientific articles with titles that are all uppercase
• papers with both a P2093 (author name string) and a P50 (author) for the same P1545 (series ordinal)
  • dedicated list: Wikidata:WikiProject Source MetaData/Wikidata lists/Semi-disambiguated authors
• most cited female scientists
  • source
• Wikipedia articles about female scientists
  • source
• Scientific articles with English titles in brackets
• data model for datasets
  • variant
  • usage of climate-related properties
  • external identifiers commonly co-occurring with SNOMED CT
• reference stats for availability of external datasets
• number of triples in Wikidata
  • 4147614103 at 01:05, 9 December 2017 (UTC)
  • 4170720958 at 23:47, 10 December 2017 (UTC)
  • 4184084283 at 01:05, 12 December 2017 (UTC)
  • 4203603264 at 01:05, 15 December 2017 (UTC)
  • 4443031326 at 16:45, 16 January 2018 (UTC)
  • 4444002349 at 11:59, 17 January 2018 (UTC)
  • 4444539592 at 19:47, 17 January 2018 (UTC)
• People with an ORCID but no occupation
  • current count
  • see also this GitHub ticket
• People with an ORCID but no gender
• Authors of scientific articles who have no occupation
• author names that are on multiple papers with at least three identical co-authors identified by item
  • hat tip to Magnus
  • dedicated list does not work yet: Wikidata:WikiProject Source MetaData/Wikidata lists/Author name strings with same co-authors on multiple works
• Journals without a main topic
• Papers with P50 but not P921
  • same for subset where the authors have an ORCID
  • variant for papers without P2093
• Papers with P921 but no P50
  • Common author strings in cited papers with P921 but no P50
• number of publications per year
• Places that have been indicated as the topic of scientific articles indexed in Wikidata
  • Variant: color-coded by occurrence of location, highlighting work that can be done, e.g. to improve African coverage
• Number of papers where at least one author has an ORCIDs
• Number of papers where all authors have ORCIDs
• Paper with the largest number of authors with ORCIDs
• Journal with the highest average percentage of ORCIDs amongst recent authors
• 3D files on Commons
• Papers with a title and an alias but no label
• Most cited surnames
• Researchers where an alias is equal to the label
• Items with ORCID but no description
• Wikidata items that are subclasses of disease and have statements referenced to Wikidata items that are instances of scientific article
• papers co-authored by relatives/ spouses
  • Papers co-authored by parent and child teams
  • most self-citing authors
  • most cited female authors
  • most cited retracted papers
  • most cited journals
  • most cited institutions
  • most cited funders
  • longest chain of citations
  • most cited chain of citations
  • highest number of author (P50)
  • images of people who have authored instances of scientific articles
  • author with largest network of co-authors
  • research fields sorted by percentage of female first authors on papers within the field
  • people who published a paper on every day of the calendar
  • papers without English description
  • common strings for authors of scientific articles
    • variant for Zika
  • author strings in cited papers
• list of items of authors (of Zika papers) who do not have a P2093 statement
• Wikidata items that have statements referenced to Wikidata items with a PMID (P698) or PMCID (P932)
  • asked here
• Graph around Zika (needs more work)
  • Inspiration
• items with "virus" in their label but with no instance or subclass statements
• Co-author name strings and item labels of co-author items for a given author
• tag authors as such if they have no statement other than P31: Q5
• scholarly works simply marked as publications rather than scholarly articles

Languages

• Disease Ontology terms ranked by number of Wikidata languages in which they have a label
• Paper items without language tag but likely in English, judging based on the title
• Candidates for a lexeme challenge on ecology

Deprecated ORCIDs

• Deprecated ORCID statements
  • modeled after this example query

Items created by a specific user

• Seen here
  • More detailed documentation of the user contributions API here and here

Methods

The following query uses these:

• Properties: title (P1476)   

  SELECT 
    DISTINCT
      ?using ?N (COUNT(?item) AS ?count)
  WHERE {
    hint:Query hint:optimizer "None".
    
  {  SERVICE wikibase:mwapi {
      bd:serviceParam wikibase:api "Search";
                      wikibase:endpoint "www.wikidata.org";
                      mwapi:srsearch "\"using\" and haswbstatement:P31=Q13442814 -haswbstatement:P4510".
        ?page_title wikibase:apiOutput mwapi:title.
    }
   }
  UNION
  {  SERVICE wikibase:mwapi {
      bd:serviceParam wikibase:api "Search";
                      wikibase:endpoint "www.wikidata.org";
                      mwapi:srsearch "\"using\" -and haswbstatement:P31=Q13442814 -haswbstatement:P4510".
        ?page_title wikibase:apiOutput mwapi:title.
    }
   }
    BIND(IRI(CONCAT(STR(wd:), ?page_title)) AS ?item)
    
    ?item wdt:P1476 ?title.
    BIND(STRAFTER(LCASE(?title), "using ") AS ?using) 
    BIND(STRLEN(REPLACE(?using, "\\S", "")) + 1 as ?N)
  }
  GROUP BY ?using ?N ?count
  ORDER BY DESC(?count)
  

Try it!

• items with potentially problematic number of pages (P1104) statements

Researchers

Add missing descriptions to researcher items

• Basque
• Chinese
• Dutch
• English
• Hindi
• Japanese
• Korean
• Kyrgyz
• Mongolian
• Swedish
• Turkish

Overview of common descriptions for researchers in a given language

• Hindi

Usage stats for scientific articles and some related identifiers

• scientific articles
• PMID
• PMCID
• DOI
• main subject
  • of which
    • taxa
    • geolocations
• MeSH ID
• cites
• authors
• author name strings
• ORCID
• ISBN-13

Detailed lists

• The following query uses these:

• Properties: PMCID (P932)   

  SELECT DISTINCT ?pmcid
    WHERE {
      ?article wdt:P932 ?pmcid .
    } LIMIT 500000 OFFSET 3000000
  

Try it!

Problematic items

• 10.1162/jmlr.2003.3.4-5.993 (Q55884722)
• Temperature-dependent Raman spectra of HoMn2O5 and TbMn2O5 (Q56002215)
• Nine new species of D imophora from Australia (Hymenoptera: Ichneumonidae): new insights on the distribution of a poorly known genus of parasitoid wasps
• Sex-biased parasitism of adult spring beetles,Heteronyx dimidiataandHeteronyx crinitus, by Tachinidae inEucalyptus nitensplantations in Australia
• In-dental office screening for diabetes mellitus using gingival crevicular blood: Retraction (Q43219180): You have been dumping retracted articles in without noticing that they have been retracted! This is acutally a faulty retraction notice that lists me (the whistleblower) as the author. There are many retractions listed in PubMed - why was this not flagged? This taints the citation information as well as lends credibility to the publication of a plagiarism. --WiseWoman (talk) 22:48, 14 January 2019 (UTC)
• https://author-disambiguator.toolforge.org/names_oauth.php?doit=Look+for+author&name=A%20Metin%20G%C3%BClmezoglu

  caused by this merge

Relevant WikiProjects

• Wikidata:WikiProject Wikidata for research
• Wikidata:WikiProject Source MetaData
• Category:Science WikiProjects

Recent edits

For latest edits, go to Special:Contributions/Research Bot or purge this page's cache. For overall edit stats, see here.

27 April 2024

• 23:2523:25, 27 April 2024 diff hist +18,818‎ N Bird conservation from obscurity to popularity: a case study of two bird species from Northeast India (Q125659093) ‎ ‎Created a new Item current
• 23:2523:25, 27 April 2024 diff hist +20,582‎ N Integration of the einstein-dirac equations for steckel spaces of type (3.1) (Q125659092) ‎ ‎Created a new Item current
• 23:2523:25, 27 April 2024 diff hist +18,888‎ N Affective Temperaments May Predict Postpartum Depression: A Preliminary Study (Q125659091) ‎ ‎Created a new Item current
• 23:2423:24, 27 April 2024 diff hist +15,122‎ N Theorising the dynamics of collaborative consumption practices: A comparison of peer-to-peer accommodation and cohousing (Q125659090) ‎ ‎Created a new Item current
• 23:2423:24, 27 April 2024 diff hist +23,452‎ N Relationship between the level of willingness to learn about anti-doping and objective knowledge among Japanese university athletes: A cross-sectional study (Q125659088) ‎ ‎Created a new Item current
• 23:2323:23, 27 April 2024 diff hist +28,779‎ N GESTATIONAL DIABETES RECURRENCE – DIFFERENCES BETWEEN FIRST AND SECOND PREGNANCY (Q125659086) ‎ ‎Created a new Item current
• 23:2323:23, 27 April 2024 diff hist +18,830‎ N Rare and in need of further preservation plants of Krasnoyarsk flora (Q125659085) ‎ ‎Created a new Item current
• 23:2323:23, 27 April 2024 diff hist +39,346‎ N First insights in terrestrial mammals monitoring in the Candelaria and Machay Reserves in the Ecuadorian Tropical Andes (Q125659082) ‎ ‎Created a new Item current
• 23:2323:23, 27 April 2024 diff hist +19,123‎ N Verification of historical smooth sheet bathymetry for the Gulf of Alaska – Integrated Ecosystem Research Program (Q125659080) ‎ ‎Created a new Item current
• 23:2323:23, 27 April 2024 diff hist +14,480‎ N Call for Papers (Q125659077) ‎ ‎Created a new Item current
• 23:2223:22, 27 April 2024 diff hist +18,802‎ N Political Persecution or Economic Deprivation? A Time-Series Analysis of Haitian Exodus, 1990—2004 (Q125659075) ‎ ‎Created a new Item current
• 23:2223:22, 27 April 2024 diff hist +11,578‎ N IDENTIFICATION OF OIL PALM ROOT-SPECIFIC GENES THROUGH MINING OF RNA-SEQ DATA AND RT-qPCR ANALYSIS (Q125659072) ‎ ‎Created a new Item current
• 23:2123:21, 27 April 2024 diff hist +17,139‎ N Effect of short-term exposure to NaCl on photochemical activity and antioxidant enzymes in Bruguiera parviflora, a non-secretor mangrove (Q125659071) ‎ ‎Created a new Item current
• 23:2123:21, 27 April 2024 diff hist +18,843‎ N 429 PB 168 NET AMMONIUM UPTAKE BY ROOTS OF FIELD-GROWN PEACH TREES IS INVERSELY RELATED TO TREE NITROGEN STATUS (Q125659069) ‎ ‎Created a new Item current
• 23:2023:20, 27 April 2024 diff hist +22,767‎ N An examination of the electronic market hypothesis in the US home mortgage industry (Q125659066) ‎ ‎Created a new Item current
• 23:2023:20, 27 April 2024 diff hist +16,639‎ N American College Students Studying Abroad in China: Language, Identity, and Self‐Presentation (Q125659065) ‎ ‎Created a new Item current
• 23:2023:20, 27 April 2024 diff hist +19,282‎ N Morphology of the antennal sensilla of two species of Hoplopyga Thomson, 1880 (Coleoptera, Scarabaeidae, Cetoniinae) (Q125659062) ‎ ‎Created a new Item
• 23:2023:20, 27 April 2024 diff hist +16,613‎ N The Geography of Italian Pasta (Q125659061) ‎ ‎Created a new Item
• 23:2023:20, 27 April 2024 diff hist +24,863‎ N Effects of nutrients and light on periphytic biomass and nutrient stoichiometry in a tropical black-water aquatic ecosystem (Q125659059) ‎ ‎Created a new Item
• 23:1923:19, 27 April 2024 diff hist +16,672‎ N On extrinsic geometry of unit normal vector fields of Riemannian hyperfoliations (Q125659058) ‎ ‎Created a new Item
• 23:1923:19, 27 April 2024 diff hist +18,624‎ N GIS and built environment (Q125659057) ‎ ‎Created a new Item
• 23:1923:19, 27 April 2024 diff hist +27,339‎ N Seasonal Dynamics of Feeding Habits of a Cyprinid Fish, Saurogobio dabryi in the Downstream of the Jialing River, China (Q125659055) ‎ ‎Created a new Item
• 23:1923:19, 27 April 2024 diff hist +40,473‎ N Improving the regeneration of CO2-binding organic liquids with a polarity change (Q125659053) ‎ ‎Created a new Item
• 23:1823:18, 27 April 2024 diff hist +17,005‎ N Constructing Domain Templates with Concept Hierarchy as Background Knowledge (Q125659050) ‎ ‎Created a new Item
• 23:1823:18, 27 April 2024 diff hist +18,754‎ N Covid-19, saúde e vulnerabilidade socioespacial na cidade de Vitória/ ES (Q125659047) ‎ ‎Created a new Item
• 23:1823:18, 27 April 2024 diff hist +21,328‎ N The shelf-life of Macrobrachium nipponense dried meats during six months storage at room temperature (Q125659046) ‎ ‎Created a new Item
• 23:1723:17, 27 April 2024 diff hist +16,815‎ N From the ‘old’ to the ‘new’ policy design: design thinking beyond markets and collaborative governance (Q125659045) ‎ ‎Created a new Item
• 23:1723:17, 27 April 2024 diff hist +26,985‎ N 112 Tumor-specific reactivity and effector function of chimeric antigen receptor engineered macrophages targeting MUC1 (Q125659044) ‎ ‎Created a new Item
• 23:1623:16, 27 April 2024 diff hist +16,640‎ N Theory of Optimum Currency Areas (Q125659043) ‎ ‎Created a new Item
• 23:1623:16, 27 April 2024 diff hist +18,608‎ N Tratamiento de aguas de escorrentía mediante humedales artificiales: Estado del arte (Q125659036) ‎ ‎Created a new Item
• 23:1523:15, 27 April 2024 diff hist +14,547‎ N Actif et interactif : Paris January 21–23, 1993 (Q125659034) ‎ ‎Created a new Item
• 23:1523:15, 27 April 2024 diff hist +22,803‎ N AI-assisted Emergency Healthcare using Vehicular Network and Support Vector Machine (Q125659033) ‎ ‎Created a new Item
• 23:1423:14, 27 April 2024 diff hist +18,858‎ N Louisiana's Coastal Impact Assistance Program (CIAP) Cutting Edge Projects, Implementation Challenges and Successes (Q125659029) ‎ ‎Created a new Item
• 23:1423:14, 27 April 2024 diff hist +36,790‎ N Microbial contamination of storerooms at the Auschwitz-Birkenau Museum (Q125659027) ‎ ‎Created a new Item
• 23:1323:13, 27 April 2024 diff hist +16,805‎ N <i>The Orphan Tsunami of 1700: Japanese Clues to a Parent Earthquake in North America.</i> Edited by Brian F. Atwater, et al (Q125659021) ‎ ‎Created a new Item Tag: wikisyntax
• 23:1323:13, 27 April 2024 diff hist +16,642‎ N <i>Netsuke</i>as symbols (Q125659020) ‎ ‎Created a new Item Tag: wikisyntax
• 23:1323:13, 27 April 2024 diff hist +15,027‎ N From colonial period to sustainable development. The status of local knowledge on nature in French sociology and anthropology (Q125659018) ‎ ‎Created a new Item
• 23:1223:12, 27 April 2024 diff hist +29,251‎ N How to measure the social sustainability of the circular economy? Developing and piloting social circular economy indicators in Finland (Q125659017) ‎ ‎Created a new Item
• 23:1223:12, 27 April 2024 diff hist +21,146‎ N Reviewing Microbial Behaviors in Ecosystems Leading to a Natural Quorum Quenching Occurrence (Q125659016) ‎ ‎Created a new Item
• 23:1223:12, 27 April 2024 diff hist +17,107‎ N Solving variational problems and partial differential equations that map between manifolds via the closest point method (Q125659011) ‎ ‎Created a new Item
• 23:1123:11, 27 April 2024 diff hist +16,735‎ N Cartographic Study of Vegetation in the Baykal Forest Reserve (Q125659009) ‎ ‎Created a new Item
• 23:1123:11, 27 April 2024 diff hist +18,488‎ N Poincare-Bendixson Theory for Leaves of Codimension One (Q125659007) ‎ ‎Created a new Item